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Functional Evidence for The Classification of Genetic Variants in Inherited Cardiomyopathies: A Systematic Review
Subject area: Biological & Medical Sciences · Area of research: Cardiovascular Genetics
DOI: https://doi.org/10.64388/IREV10I1-1720206
Abstract
Inherited cardiomyopathies are genetically heterogeneous myocardial disorders associated with heart failure, arrhythmia and sudden cardiac death. Next-generation sequencing has increased the detection of rare variants, but many remain variants of uncertain significance because population, computational, segregation and clinical evidence alone may not establish pathogenicity. Functional studies can support classification through the ACMG/AMP PS3 and BS3 criteria, although their evidential value depends on biological relevance, assay validation, controls, replication and reproducibility. Objective: This systematic review aims to evaluate the nature, methodological quality and classification impact of functional evidence reported for genetic variants associated with inherited cardiomyopathies. Methods: A systematic search will be conducted in selected bibliographic databases from inception to the final search date. Peer-reviewed studies reporting variant-specific functional evaluation in inherited cardiomyopathy will be considered. Two-stage screening, structured data extraction, methodological appraisal and evidence synthesis will be performed according to a prespecified protocol. Experimental models, assay endpoints, controls, replication, statistical analysis, ACMG/AMP functional-criterion application and variant-reclassification outcomes will be examined. Reporting will follow PRISMA 2020. Anticipated contribution: The review will identify functional approaches that provide robust evidence, clarify limitations that weaken PS3 or BS3 application, determine how functional results have influenced variant classification and identify priorities for assay validation and future research. Conclusion: The final abstract will be updated after completion of searching, screening, quality assessment and synthesis to report the verified number of included studies, principal findings and evidence-based conclusions. No numerical result or reclassification outcome is asserted at the protocol stage.
Keywords
Inherited Cardiomyopathy, Functional Evidence, Genetic Variant, Variant of Uncertain Significance, ACMG/AMP, PS3, BS3, Systematic Review
References
[1] Abbas, M. T., Baba Ali, N., Farina, J. M., et al. (2024). Role of genetics in diagnosis and management of hypertrophic cardiomyopathy: A glimpse into the future. Biomedicines, 12(3), 682. https://doi.org/10.3390/biomedicines12030682
[2] Arbelo, E., Protonotarios, A., Gimeno, J. R., et al. (2023). 2023 ESC guidelines for the management of cardiomyopathies. European Heart Journal, 44(37), 3503–3626. https://doi.org/10.1093/eurheartj/ehad194
[3] Arbustini, E., Behr, E. R., Carrier, L., et al. (2022). Interpretation and actionability of genetic variants in cardiomyopathies: A position statement from the European Society of Cardiology Council on Cardiovascular Genomics. European Heart Journal, 43(20), 1901–1916. https://doi.org/10.1093/eurheartj/ehab895
[4] Barrick, S. K., Garg, A., Greenberg, L., Zhang, S., Lin, C. Y., Stitziel, N. O., Greenberg,
[5] M. J. (2023). Functional assays reveal the pathogenic mechanism of a de novo tropomyosin variant identified in patient with dilated cardiomyopathy. Journal of molecular andcellular cardiology,176, 58-67. https://doi.org/10.1016/j.yjmcc.2023.01.014
[6] Begay, R. L., Tharp, C. A., Martin, A., Graw, S. L., Sinagra, G., Miani, D., Sweet, M. E.,
[7] Slavov, D. B., Stafford, N., Zeller, M. J., Alnefaie, R., Rowland, T. J., Brun, F., Jones, K. L., Gowan, K., Mestroni, L., Garrity, D. M., Taylor, M. R. (2016). FLNC Gene Splice Mutations Cause Dilated Cardiomyopathy. JACC. Basic to translational science, 1(5), 344-359. https://doi.org/10.1016/j.jacbts.2016.05.004
[8] Brnich, S. E., Abou Tayoun, A. N., Couch, F. J., Cutting, G. R., Greenblatt, M. S., Heinen,
[9] C. D., Kanavy, D. M., Luo, X., McNulty, S. M., Starita, L. M., Tavtigian, S. V.,
[10] Wright, M. W., Harrison, S. M., Biesecker, L. G., & Berg, J. S. (2020). Recommendations for application of the functional evidence PS3/BS3 criterion using the ACMG/AMP sequence variant interpretation framework. Genome Medicine, 12, 3. https://doi.org/10.1186/s13073-019-0690-2
[11] Broadway-Stringer, S., Jiang, H., Wadmore, K., Hooper, C., Douglas, G., Steeples, V., Azad, A. J., Singer, E., Reyat, J. S., Galatik, F., Ehler, E., Bennett, P., Kalisch-
[12] Smith, J. I., Sparrow, D. B., Davies, B., Djinovic-Carugo, K., Gautel, M., Watkins, H., Gehmlich, K. (2023). Insights into the Role of a Cardiomyopathy-Causing GeneticVariantinACTN2.Cells, 12(5), 721. https://doi.org/10.3390/cells12050721
[13] Brodehl, A., Hain, C., Flottmann, F., Ratnavadivel, S., Gaertner, A., Klauke, B., Kalinowski, J., Körperich, H., Gummert, J., Paluszkiewicz, L., Deutsch, M. A., Milting, H. (2021). The Desmin Mutation DES-c.735G>C Causes Severe Restrictive Cardiomyopathy by Inducing In-Frame Skipping of Exon-3. Biomedicines, 9(10), 1400. https://doi.org/10.3390/biomedicines9101400
[14] Burke, M. A., Cook, S. A., Seidman, J. G., & Seidman, C. E. (2016). Clinical and mechanistic insights into the genetics of cardiomyopathy. Journal of the American CollegeofCardiology, 68(25),2871–2886. https://doi.org/10.1016/j.jacc.2016.08.079
[15] Carrier, L., Mearini, G., Stathopoulou, K., & Cuello, F. (2015). Cardiac myosin-binding protein C (MYBPC3) in cardiac pathophysiology. Gene, 573(2), 188–197. https://doi.org/10.1016/j.gene.2015.09.008
[16] Charron, P., Arad, M., Arbustini, E., et al. (2010). Genetic counselling and testing in cardiomyopathies: A position statement of the European Society of Cardiology Working Group on Myocardial and Pericardial Diseases. European Heart Journal, 31(22), 2715–2726. https://doi.org/10.1093/eurheartj/ehq271
[17] Cirino, A. L., Harris, S., Lakdawala, N. K., et al. (2017). Role of genetic testing in inherited cardiovascular disease: A review. JAMA Cardiology, 2(10), 1153–1160. https://doi.org/10.1001/jamacardio.2017.2352
[18] Corrado, D., Link, M. S., & Calkins, H. (2017). Arrhythmogenic right ventricular cardiomyopathy. New England Journal of Medicine, 376(1), 61–72. https://doi.org/10.1056/NEJMra1509267
[19] Davis, J., Davis, L. C., Correll, R. N., et al. (2016). A tension-based model distinguishes hypertrophic versus dilated cardiomyopathy. Cell, 165(5), 1147–1159. https://doi.org/10.1016/j.cell.2016.04.002
[20] Dong, R., Zhou, X., Zhang, H., Shi, B., Liu, G., Liu, Y. (2024). Novel FLNC variants in pediatric cardiomyopathy: an insight into disease mechanisms. Human genomics, 18(1), 118. https://doi.org/10.1186/s40246-024-00683-9
[21] Eijgenraam, T. R., Boogerd, C. J., Stege, N. M., Oliveira Nunes Teixeira, V., Dokter, M. M., Schmidt, L. E., Yin, X., Theofilatos, K., Mayr, M., van der Meer, P., van Rooij, E., van der Velden, J., Silljé, H. H. W., de Boer, R. A. (2021). Protein Aggregation Is an Early Manifestation of Phospholamban p.(Arg14del)-Related Cardiomyopathy: Development of PLN-R14del-Related Cardiomyopathy. Circulation.Heart failure,14(11), e008532. https://doi.org/10.1161/CIRCHEARTFAILURE.121.008532
[22] Elliott, P., Andersson, B., Arbustini, E., et al. (2008). Classification of the cardiomyopathies: A position statement from the European Society of Cardiology Working Group on Myocardial and Pericardial Diseases. European Heart Journal, 29(2), 270–276. https://doi.org/10.1093/eurheartj/ehm342
[23] Fomin, A., Gärtner, A., Cyganek, L., Tiburcy, M., Tuleta, I., Wellers, L., Folsche, L., Hobbach, A. J., von Frieling-Salewsky, M., Unger, A., Hucke, A., Koser, F., Kassner, A., Sielemann, K., Streckfuß-Bömeke, K., Hasenfuss, G., Goedel, A., Laugwitz, K. L., Moretti, A., … Linke, W. A. (2021). Truncated titin proteins and titin haploinsufficiency are targets for functional recovery in human cardiomyopathy due to TTN mutations. Science translational medicine, 13(618), eabd3079. https://doi.org/10.1126/scitranslmed.abd3079
[24] Friedman, C. E., Fayer, S., Pendyala, S., Chien, W. M., Loiben, A., Tran, L., Chao, L. S., McKinstry, A., Ahmed, D., Farris, S. D., Stempien-Otero, A., Jonlin, E. C., Murry,
[25] C. E., Starita, L. M., Fowler, D. M., Yang, K. C. (2024). Multiplexed Functional Assessments of MYH7 Variants in Human Cardiomyocytes. Circulation. Genomic and precision medicine,17(2),e004377. https://doi.org/10.1161/CIRCGEN.123.004377
[26] Gehmlich, K., Syrris, P., Peskett, E., Evans, A., Ehler, E., Asimaki, A., Anastasakis, A., Tsatsopoulou, A., Vouliotis, A. I., Stefanadis, C., Saffitz, J. E., Protonotarios, N., McKenna, W. J. (2011). Mechanistic insights into arrhythmogenic right ventricular cardiomyopathy caused by desmocollin-2 mutations. Cardiovascular research, 90(1), 77-87. https://doi.org/10.1093/cvr/cvq353
[27] Gerull, B., Gramlich, M., Atherton, J., et al. (2002). Mutations of TTN, encoding the giant muscle filament titin, cause familial dilated cardiomyopathy. Nature Genetics, 30(2), 201–204. https://doi.org/10.1038/ng815
[28] Harrison, S. M., Biesecker, L. G., & Rehm, H. L. (2019). Overview of specifications to the ACMG/AMP variant interpretation guidelines. Current Protocols in Human Genetics, 103(1), e93. https://doi.org/10.1002/cphg.93
[29] Hershberger, R. E., Givertz, M. M., Ho, C. Y., et al. (2018). Genetic evaluation of cardiomyopathy-A Heart Failure Society of America practice guideline. Journal of Cardiac Failure, 24(5), 281–302. https://doi.org/10.1016/j.cardfail.2018.03.004
[30] Hershberger, R. E., Pinto, J. R., Parks, S. B., Kushner, J. D., Li, D., Ludwigsen, S., Cowan, J., Morales, A., Parvatiyar, M. S., Potter, J. D. (2009). Clinical and functional characterization of TNNT2 mutations identified in patients with dilated cardiomyopathy. Circulation. Cardiovascular genetics, 2(4), 306-13. https://doi.org/10.1161/CIRCGENETICS.108.846733
[31] Hespe, S., Gray, B., & Puranik, R. (2024). The role of genetic testing in management and prognosis of individuals with inherited cardiomyopathies. Trends in CardiovascularMedicine.Advanceonline publication. https://doi.org/10.1016/j.tcm.2024.06.002
[32] Higgins, J. P. T., Thomas, J., Chandler, J., Cumpston, M., Li, T., Page, M. J., & Welch,
[33] V. A. (Eds.). (2019). Cochrane handbook for systematic reviews of interventions (2nd ed.). Wiley.
[34] Ingles, J., Goldstein, J., Thaxton, C., et al. (2019). Evaluating the clinical validity of hypertrophic cardiomyopathy genes. Circulation: Genomic and Precision Medicine, 12(2), e002460. https://doi.org/10.1161/CIRCGEN.119.002460
[35] Ito, K., Patel, P. N., Gorham, J. M., McDonough, B., DePalma, S. R., Adler, E. E., Lam,
[36] L., MacRae, C. A., Mohiuddin, S. M., Fatkin, D., Seidman, C. E., Seidman, J. G. (2017). Identification of pathogenic gene mutations in LMNA and MYBPC3 that alter RNA splicing. Proceedings of the National Academy of Sciences of the UnitedStates of America, 114(29),7689-7694. https://doi.org/10.1073/pnas.1707741114
[37] Jordan, E., Peterson, L., Ai, T., et al. (2021). Evidence-based assessment of genes in dilated cardiomyopathy.Circulation,144(1), 7–19. https://doi.org/10.1161/CIRCULATIONAHA.120.053033
[38] Kanavy, D. M., McNulty, S. M., Jairath, M. K., Brnich, S. E., Bastarache, L., Coble, C. A., et al. (2019). Comparative analysis of functional assay evidence use by
[39] ClinGen Variant Curation Expert Panels. Genome Medicine, 11, 77. https://doi.org/10.1186/s13073-019-0683-1
[40] Kato, K., Ohno, S., Sonoda, K., Fukuyama, M., Makiyama, T., Ozawa, T., Horie, M. (2020). LMNA Missense Mutation Causes Nonsense-Mediated mRNA Decay and Severe Dilated Cardiomyopathy. Circulation. Genomic and precision medicine, 13(5), 435-443. https://doi.org/10.1161/CIRCGEN.119.002853
[41] Kelly, M. A., Caleshu, C., Morales, A., Buchan, J., Wolf, Z., Harrison, S. M., et al. (2018). Adaptation and validation of the ACMG/AMP variant classification framework for MYH7-associated inherited cardiomyopathies. Genetics in Medicine, 20, 351– 359. https://doi.org/10.1038/gim.2017.218
[42] Kimura, A. (2016). Molecular genetics and pathogenesis of cardiomyopathy. Journal of Human Genetics, 61(1), 41–50. https://doi.org/10.1038/jhg.2015.83
[43] Komurcu-Bayrak, E., Kalkan, M. A., Coban, N., Ozsait-Selcuk, B., Bayrak, F. (2022). Identification of the pathogenic effects of missense variants causing PRKAG2 cardiomyopathy. Archives of biochemistry and biophysics, 727, 109340. https://doi.org/10.1016/j.abb.2022.109340
[44] Landrum, M. J., Lee, J. M., Benson, M., et al. (2018). ClinVar: Improving access to variant interpretations and supporting evidence. Nucleic Acids Research, 46(D1), D1062–D1067. https://doi.org/10.1093/nar/gkx1153
[45] Landstrom, A. P., Parvatiyar, M. S., Pinto, J. R., Marquardt, M. L., Bos, J. M., Tester, D. J., Ommen, S. R., Potter, J. D., Ackerman, M. J. (2008). Molecular and functional characterization of novel hypertrophic cardiomyopathy susceptibility mutations in TNNC1-encoded troponin C. Journal of molecular and cellular cardiology, 45(2), 281-8. https://doi.org/10.1016/j.yjmcc.2008.05.003
[46] Lek, M., Karczewski, K. J., Minikel, E. V., et al. (2016). Analysis of protein-coding genetic variation in 60,706 humans. Nature, 536(7616), 285–291. https://doi.org/10.1038/nature19057
[47] Li, Y., Liu, S., Huang, J., Xie, Y., Hou, A., Wei, Y. (2024). Cellular-level analyses of SCN5A mutations in left ventricular noncompaction cardiomyopathy suggest electrophysiological mechanisms for ventricular tachycardia. Biochemistry and biophysics reports, 37, 101653. https://doi.org/10.1016/j.bbrep.2024.101653
[48] Li, Y., Ma, K., Dong, Z., Gao, S., Zhang, J., Huang, S., Yang, J., Fang, G., Li, Y., Li, X., Welch, C., Griffin, E. L., Ramaswamy, P., Valivullah, Z., Liu, X., Dong, J., Wang,
[49] D. W., Du, J., Chung, W. K., Li, Y. (2024). Frameshift variants in C10orf71 cause dilated cardiomyopathy in human, mouse, and organoid models. The Journal of clinical investigation, 134(12), e177172. https://doi.org/10.1172/JCI177172
[50] MacArthur, D. G., Manolio, T. A., Dimmock, D. P., et al. (2014). Guidelines for investigating causality of sequence variants in human disease. Nature, 508(7497), 469–476. https://doi.org/10.1038/nature13127
[51] Maron, B. J., Gardin, J. M., Flack, J. M., et al. (1995). Prevalence of hypertrophic cardiomyopathy in a general population of young adults. Circulation, 92(4), 785–789. https://doi.org/10.1161/01.CIR.92.4.785
[52] Mazzarotto, F., Olivotto, I., Boschi, B., et al. (2020). Contemporary insights into the genetics of hypertrophic cardiomyopathy: Toward a new era in clinical testing? Journal of the American Heart Association, 9(8), e015473. https://doi.org/10.1161/JAHA.119.015473
[53] McNally, E. M., & Mestroni, L. (2017). Dilated cardiomyopathy: Genetic determinants and mechanisms. Circulation Research, 121(7), 731–748. https://doi.org/10.1161/CIRCRESAHA.116.309396
[54] Miura, K., Matsuura, K., Yamasaki Itoyama, Y., Sasaki, D., Takada, T., Furutani, Y., Hayama, E., Ito, M., Nomura, S., Morita, H., Toyoda, M., Umezawa, A., Onoue, K., Saito, Y., Aburatani, H., Nakanishi, T., Hagiwara, N., Komuro, I., Shimizu, T. (2022). Functional Evaluation of Human Bioengineered Cardiac Tissue Using iPS Cells Derived from a Patient with Lamin Variant Dilated Cardiomyopathy. International heart journal, 63(2), 338-346. https://doi.org/10.1536/ihj.21-790
[55] Musunuru, K., Hershberger, R. E., Day, S. M., et al. (2020). Genetic testing for inherited cardiovascular diseases: A scientific statement from the American Heart Association. Circulation: Genomic and Precision Medicine, 13(4), e000067. https://doi.org/10.1161/HCG.0000000000000067
[56] Nishiyama, T., Zhang, Y., Cui, M., Li, H., Sanchez-Ortiz, E., McAnally, J. R., Tan, W., Kim, J., Chen, K., Xu, L., Bassel-Duby, R., Olson, E. N. (2022). Precise genomic editing of pathogenic mutations in RBM20 rescues dilated cardiomyopathy. Science translationalmedicine,14(672), eade1633. https://doi.org/10.1126/scitranslmed.ade1633
[57] O'Neill, M. J., Chen, S. N., Rumping, L., Johnson, R., van Slegtenhorst, M., Glazer, A. M., Yang, T., Solus, J. F., Laudeman, J., Mitchell, D. W., Vanags, L. R., Kroncke,
[58] B. M., Anderson, K., Gao, S., Verdonschot, J. A. J., Brunner, H., Hellebrekers, D., Taylor, M. R. G., Roden, D. M., … Shoemaker, M. B. (2023). Multicenter clinical and functional evidence reclassifies a recurrent noncanonical filamin C splice-altering variant. Heart rhythm, 20(8), 1158-1166.
[59] https://doi.org/10.1016/j.hrthm.2023.05.006
[60] Page, M. J., McKenzie, J. E., Bossuyt, P. M., Boutron, I., Hoffmann, T. C., Mulrow, C. D., et al. (2021). The PRISMA 2020 statement: An updated guideline for reporting systematic reviews. BMJ, 372, n71. https://doi.org/10.1136/bmj.n71
[61] Pettinato, A. M., Ladha, F. A., Mellert, D. J., Legere, N., Cohn, R., Romano, R., Thakar, K., Chen, Y. S., Hinson, J. T. (2020). Development of a Cardiac Sarcomere Functional Genomics Platform to Enable Scalable Interrogation of Human TNNT2 Variants. Circulation,142(23),2262-2275.
[62] https://doi.org/10.1161/CIRCULATIONAHA.120.047999
[63] Pinto, J. R., Siegfried, J. D., Parvatiyar, M. S., Li, D., Norton, N., Jones, M. A., Liang, J., Potter, J. D., Hershberger, R. E. (2011). Functional characterization of TNNC1 rare variants identified in dilated cardiomyopathy. The Journal of biological chemistry, 286(39), 34404-12. https://doi.org/10.1074/jbc.M111.267211
[64] Rajkumar, R., Sembrat, J. C., McDonough, B., Seidman, C. E., Ahmad, F. (2012). Functional effects of the TMEM43 Ser358Leu mutation in the pathogenesis of arrhythmogenic right ventricular cardiomyopathy. BMC medical genetics, 13, 21. https://doi.org/10.1186/1471-2350-13-21
[65] Richards, S., Aziz, N., Bale, S., et al. (2015). Standards and guidelines for the interpretation of sequence variants: A joint consensus recommendation of the ACMG and AMP. Genetics in Medicine, 17(5), 405–424. https://doi.org/10.1038/gim.2015.30
[66] Roberts, A. M., Ware, J. S., Herman, D. S., et al. (2015). Integrated allelic, transcriptional, and phenomic dissection of the cardiac effects of titin truncations in health and disease. Science Translational Medicine, 7(270), 270ra6. https://doi.org/10.1126/scitranslmed.3010134
[67] Shafaattalab, S., Li, A. Y., Jayousi, F., Maaref, Y., Dababneh, S., Hamledari, H., Baygi,
[68] D. H., Barszczewski, T., Ruprai, B., Jannati, S., Nagalingam, R., Cool, A. M.,
[69] Langa, P., Chiao, M., Roston, T., Solaro, R. J., Sanatani, S., Toepfer, C., Lindert, S., … Tibbits, G. F. (2023). Mechanisms of Pathogenicity of Hypertrophic Cardiomyopathy-Associated Troponin T (TNNT2) Variant R278C+/- During Development. bioRxiv : the preprint server for biology, 2023.06.06.542948. https://doi.org/10.1101/2023.06.06.542948
[70] Sterne, J. A. C., Savović, J., Page, M. J., Elbers, R. G., Blencowe, N. S., Boutron, I., et al. (2019). RoB 2: A revised tool for assessing risk of bias in randomised trials. BMJ, 366, l4898.
[71] Towbin, J. A., McKenna, W. J., Abrams, D. J., et al. (2019). 2019 HRS expert consensus statement on evaluation, risk stratification, and management of arrhythmogenic cardiomyopathy.HeartRhythm, 16(11),e301–e372. https://doi.org/10.1016/j.hrthm.2019.05.007
[72] Valtonen, J., Prajapati, C., Cherian, R. M., Vanninen, S., Ojala, M., Leivo, K., Heliö, T., Koskenvuo, J., Aalto-Setälä, K. (2023). The Junctophilin-2 Mutation p.(Thr161Lys) Is Associated with Hypertrophic Cardiomyopathy Using Patient-Specific iPS Cardiomyocytes and Demonstrates Prolonged Action Potential and IncreasedArrhythmogenicity. Biomedicines,11(6), 1558. https://doi.org/10.3390/biomedicines11061558
[73] van den Hoogenhof, M. M. G., Beqqali, A., Amin, A. S., van der Made, I., Aufiero, S., Khan, M. A. F., Schumacher, C. A., Jansweijer, J. A., van Spaendonck-Zwarts, K. Y., Remme, C. A., Backs, J., Verkerk, A. O., Baartscheer, A., Pinto, Y. M., Creemers, E. E. (2018). RBM20 Mutations Induce an Arrhythmogenic Dilated Cardiomyopathy Related to Disturbed Calcium Handling. Circulation, 138(13), 1330-1342. https://doi.org/10.1161/CIRCULATIONAHA.117.031947
[74] van der Velden, J., Ho, C. Y., Tardiff, J. C., et al. (2015). Research priorities in sarcomeric cardiomyopathies. Cardiovascular Research, 105(4), 449–456. https://doi.org/10.1093/cvr/cvv019
[75] Walker, L. C., Hoya, M., Wiggins, G. A. R., Lindy, A., Vincent, L. M., Parsons, M. T., et al. (2023). Using the ACMG/AMP framework to capture evidence related to predicted and observed impact on splicing. American Journal of Human Genetics, 110, 1046–1067. https://doi.org/10.1016/j.ajhg.2023.06.002
[76] Walsh, R., Thomson, K. L., Ware, J. S., et al. (2017). Reassessment of Mendelian gene pathogenicity using 7,855 cardiomyopathy cases and 60,706 reference samples. Genetics in Medicine, 19(2), 192–203. https://doi.org/10.1038/gim.2016.90
[77] Ware, J. S., Cook, S. A. (2018). Role of titin in cardiomyopathy: From DNA variants to patient stratification. Nature Reviews Cardiology, 15(4), 241–252. https://doi.org/10.1038/nrcardio.2017.190
[78] Wilde, A. A. M., Semsarian, C., Márquez, M. F., et al. (2022). European Heart Rhythm Association/Heart Rhythm Society/Asia Pacific Heart Rhythm Society/Latin American Heart Rhythm Society expert consensus statement on the state of genetic testing for cardiac diseases. Europace, 24(8), 1307–1367. https://doi.org/10.1093/europace/euac030
[79] Yuen, M., Worgan, L., Iwanski, J., Pappas, C. T., Joshi, H., Churko, J. M., Arbuckle, S., Kirk, E. P., Zhu, Y., Roscioli, T., Gregorio, C. C., Cooper, S. T. (2022). Neonatal-lethal dilated cardiomyopathy due to a homozygous LMOD2 donor splice-site variant. European journal of human genetics : EJHG, 30(4), 450-457. https://doi.org/10.1038/s41431-022-01043-8
[80] Zaklyazminskaya, E. V., Nefedova, V. V., Koubassova, N. A., Kotlukova, N. P., Kopylova, G. V., Kochurova, A. M., Shchepkin, D. V., Ryabkova, N. S., Katrukha, I. A., Kleymenov, S. Y., Bershitsky, S. Y., Matyushenko, A. M., Tsaturyan, A. K., Levitsky, D. I. (2024). Novel Mutation Lys30Glu in the TPM1 Gene Leads to Pediatric Left Ventricular Non-Compaction and Dilated Cardiomyopathy via Impairment of Structural and Functional Properties of Cardiac Tropomyosin. International journal of molecular sciences, 25(23), 13059. https://doi.org/10.3390/ijms252313059
How to cite this paper
@article{1720206,
author = {Abolaji Tawakalitu Durodoye},
title = {Functional Evidence for The Classification of Genetic Variants in Inherited Cardiomyopathies: A Systematic Review},
journal = {Iconic Research And Engineering Journals},
year = {2026},
volume = {10},
number = {1},
pages = {3776-3826},
issn = {2456-8880},
url = {https://www.irejournals.com/formatedpaper/1720206.pdf},
abstract = {Inherited cardiomyopathies are genetically heterogeneous myocardial disorders associated with heart failure, arrhythmia and sudden cardiac death. Next-generation sequencing has increased the detection of rare variants, but many remain variants of uncertain significance because population, computational, segregation and clinical evidence alone may not establish pathogenicity. Functional studies can support classification through the ACMG/AMP PS3 and BS3 criteria, although their evidential value depends on biological relevance, assay validation, controls, replication and reproducibility.
Objective: This systematic review aims to evaluate the nature, methodological quality and classification impact of functional evidence reported for genetic variants associated with inherited cardiomyopathies.
Methods: A systematic search will be conducted in selected bibliographic databases from inception to the final search date. Peer-reviewed studies reporting variant-specific functional evaluation in inherited cardiomyopathy will be considered. Two-stage screening, structured data extraction, methodological appraisal and evidence synthesis will be performed according to a prespecified protocol. Experimental models, assay endpoints, controls, replication, statistical analysis, ACMG/AMP functional-criterion application and variant-reclassification outcomes will be examined. Reporting will follow PRISMA 2020.
Anticipated contribution: The review will identify functional approaches that provide robust evidence, clarify limitations that weaken PS3 or BS3 application, determine how functional results have influenced variant classification and identify priorities for assay validation and future research.
Conclusion: The final abstract will be updated after completion of searching, screening, quality assessment and synthesis to report the verified number of included studies, principal findings and evidence-based conclusions. No numerical result or reclassification outcome is asserted at the protocol stage.},
keywords = {Inherited Cardiomyopathy, Functional Evidence, Genetic Variant, Variant of Uncertain Significance, ACMG/AMP, PS3, BS3, Systematic Review},
month = {July},
doi = {https://doi.org/10.64388/IREV10I1-1720206}
}