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1711765PublishedVol 9 · Issue 5

A Unified Multi-Modal Transformer Framework for Synergistic Cancer Diagnosis

Ayush Mishra Anadi Mishra Adarsh Tiwari Uttam Sharma Nikhil Raj

Subject area: Science,Engineering and Technology  ·  Area of research: Multi-modal Learning, Precision Medicine

Abstract

Early cancer diagnosis is critical for improving patient outcomes but is challenged by the disease?s profound heterogeneity. This paper introduces a unified, AI-powered framework that synergistically integrates histopathology, genomics, and proteomics data to enhance early cancer detection. Our architecture features a novel multi-transformer model with dedicated Vision and Genomic Transformers to encode modality-specific features, which are then fused by a cross-modal attention transformer. This intermediate fusion strategy enables the model to learn intricate genotype-phenotype correlations often missed by traditional methods. Validated on cohorts from The Cancer Genome Atlas (TCGA), our framework demonstrates a significant improvement in diagnostic performance over single-modality baselines. We also incorporate Explainable AI (XAI) techniques to ensure model transparency, a crucial step for clinical adoption. The framework serves as both a powerful diagnostic tool and a hypothesis- generation engine, uncovering novel biomarkers from complex multi-modal data and advancing computational pathology and personalized medicine.

Keywords

Multi-Modal Learning, Transformers, Histopathology, Genomics, Proteomics, Explainable AI, Early Cancer Diagnosis

How to cite this paper

Ayush Mishra, Anadi Mishra, Adarsh Tiwari, Uttam Sharma, Nikhil Raj "A Unified Multi-Modal Transformer Framework for Synergistic Cancer Diagnosis" Iconic Research And Engineering Journals Volume 9 Issue 5 2025 Page 197-205
Ayush Mishra, Anadi Mishra, Adarsh Tiwari, Uttam Sharma, Nikhil Raj "A Unified Multi-Modal Transformer Framework for Synergistic Cancer Diagnosis" Iconic Research And Engineering Journals, vol. 9, no. 5, Dec. 2025
Ayush Mishra, Anadi Mishra, Adarsh Tiwari, Uttam Sharma, Nikhil Raj (2025). A Unified Multi-Modal Transformer Framework for Synergistic Cancer Diagnosis. Iconic Research And Engineering Journals, 9(5).
Ayush Mishra, Anadi Mishra, Adarsh Tiwari, Uttam Sharma, Nikhil Raj "A Unified Multi-Modal Transformer Framework for Synergistic Cancer Diagnosis" Iconic Research And Engineering Journals, vol. 9, no. 5, Dec. 2025.
@article{1711765,
      author = {Ayush Mishra, Anadi Mishra, Adarsh Tiwari, Uttam Sharma, Nikhil Raj},
      title = {A Unified Multi-Modal Transformer Framework for Synergistic Cancer Diagnosis},
      journal = {Iconic Research And Engineering Journals},
      year = {2025},
      volume = {9},
      number = {5},
      pages = {197-205},
      issn = {2456-8880},
      url = {https://www.irejournals.com/formatedpaper/1711765.pdf},
      abstract = {Early cancer diagnosis is critical for improving patient outcomes but is challenged by the disease?s profound heterogeneity. This paper introduces a unified, AI-powered framework that synergistically integrates histopathology, genomics, and proteomics data to enhance early cancer detection. Our architecture features a novel multi-transformer model with dedicated Vision and Genomic Transformers to encode modality-specific features, which are then fused by a cross-modal attention transformer. This intermediate fusion strategy enables the model to learn intricate genotype-phenotype correlations often missed by traditional methods. Validated on cohorts from The Cancer Genome Atlas (TCGA), our framework demonstrates a significant improvement in diagnostic performance over single-modality baselines. We also incorporate Explainable AI (XAI) techniques to ensure model transparency, a crucial step for clinical adoption. The framework serves as both a powerful diagnostic tool and a hypothesis- generation engine, uncovering novel biomarkers from complex multi-modal data and advancing computational pathology and personalized medicine.},
      keywords = {Multi-Modal Learning, Transformers, Histopathology, Genomics, Proteomics, Explainable AI, Early Cancer Diagnosis},
      month = {November},
  }